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Align Genomes with Mauve

Align bacterial genomes with the Mauve plugin. Convert Mauve alignments into standard alignments for downstream applications.

Align Draft Genomes with Mauve Contig Mover

INSIDE THE VIDEO
Order draft genomes against a reference sequence with the Mauve contig mover.

LENGTH
4 minutes

Align Whole Genomes Using Mauve

INSIDE THE VIDEO
Learn to align complete bacterial genomes with progressive Mauve.

  • About Mauve
  • Create a Mauve alignment
  • Use the Mauve alignment viewer

LENGTH
5 minutes

Convert a Mauve Alignment to a Standard Alignment

INSIDE THE VIDEO
Learn to convert a Mauve alignment into a standard alignment.

  • Extract Mauve regions
  • Concatenate sequences
  • Batch rename

LENGTH
3 minutes

Recommended Resources

ALIGN WITH MAUVE

TUTORIAL
Practice Aligning with Mauve

Align bacterial genomes using the Mauve plugin with these practical exercises.

FAQ
Why is my alignment taking so long?

How to choose the appropriate alignment algorithm for your dataset.

MANUAL
Instructions for the Mauve Aligner

A guide to aligning bacterial genomes with Mauve in Geneious.

MANUAL
Instructions for Installing Plugins

A guide extending to the functionality of Geneious Prime by installing plugins.

GENEIOUS ACADEMY

How to build phylogenetic trees
How to perform multiple alignments
How to map to reference
How to annotate sequences